Tnseq of Xylella fastidiosa: almond - SRA

SRX24538385: Tnseq of Xylella fastidiosa: almond
1 ILLUMINA (Illumina NovaSeq 6000) run: 72.7M spots, 5.5G bases, 1.6Gb downloads

Design: Transposon sequencing libraries based on specific amplification of Tn5 transposon

Submitted by: USDA-ARS

Study: Transposon sequencing of Xylella fastidiosa M23 in grapevine and almond

PRJNA1111135 • SRP507377 • All experiments • All runs

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This study used transposon sequencing (Tnseq) to predict genes essential for Xylella fastidiosa growth in plants. Tn5 transposon mutant pools of Xylella fastidiosa M23 were inoculated into susceptible grapevines and almond plants, and re-isolated after ten weeks. These sequences are 3 replicates each of Tn5 mutant pools re-isolated from grapevine, almond, and from growth in rich culture medium (PD3).

Sample:

SAMN41384177 • SRS21283264 • All experiments • All runs

Organism: Xylella fastidiosa subsp. fastidiosa

Library:

Name: ATTR-8

Instrument: Illumina NovaSeq 6000

Strategy: Tn-Seq

Source: GENOMIC

Selection: PCR

Layout: SINGLE

Runs: 1 run, 72.7M spots, 5.5G bases, 1.6Gb

Run	# of Spots	# of Bases	Size	Published
SRR29011525	72,741,418	5.5G	1.6Gb	2024-05-13

ID:: 32856243

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Sequence Read Archive

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